Bioinformatics Questions, Problems & Solutions : TransWikia.com ~ Page 12

How can i get data set of illness and not illness people?

I'm reading a virology paper where the authors made a classification for the patients as to whether they had a specific disease outcome or not against the underlying sequence ...The...

Asked on 08/22/2021 by user5520049

1 answer

How I change a function not to need an input

There is a function does need an input as selected genomic site across genomic regions. But my genomic region bed file already is a subset of interesting site (like promoters)....

Asked on 08/22/2021 by Exhausted

1 answer

DESeqDataSetFromTximport all(lengths > 0) is not TRUE

I am suddenly running into an error when running the DESeqDataSetFromTximporttxi.rsem <- tximport(files, type = "rsem", txIn = FALSE, txOut = FALSE)dds <- DESeqDataSetFromTximport(txi = txi.rsem, ...

Asked on 08/22/2021

2 answer

Download multiple fastq files using fastq-dump

I want to download the following fastq files at the same time in Salmon: - SRR10611214 - SRR10611215 - SRR10611215 - SRR10611216 - SRR10611217Is there a way to do...

Asked on 08/22/2021

3 answer

How do I get cromwell to create soft-links?

The file system I'm running on doesn't allow the creation of hard-links. Cromwell is trying to create hard-links to directories, and when that fails, it's copying them. Which...

Asked on 08/22/2021 by Greg Dougherty

0 answer

VCF spec: is it possible to have other alleles in addition to the MISSING value ('.') in ALTS?

I'm writing a VCF parser, so I have to consider and handle all corner cases regardless of how contrived they may seem. The specification is a bit...

Asked on 08/22/2021 by revl

0 answer

How can I restrict the search space when querying GEO?

I am using the following command to retrieve GEO Datasets entries for daf-2 c. elegans that have as their experiment type High Throughpout sequencing:esearch -db gds -query "daf-2" |...

Asked on 08/22/2021 by An Ignorant Wanderer

1 answer

Adding treatment groups via metadata to Seurat object?

I'd like to add metadata to 6 individual Seurat objects so that after I merge the objects into one, I can later label or split by using these identifiers. For...

Asked on 08/21/2021 by astro_guy

1 answer

Human Herpes Virus, fusion motif in protein vs. SARS-CoV-2?

Is it possible that the fusion with cell propriety of Human Herpes virus, I see X14112.1 in GenBank is due to protein UL36 (tegument of virus) starting...

Asked on 08/21/2021

1 answer

Identification of starting point for the synthesis of a protein

identify where is the starting point for the synthesis of a protein in the DNAFor indentify a starting point in RNA or DNA my function search all ATG or M...

Asked on 08/21/2021 by RosLuP

1 answer

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