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I am trying to open .bam files in C++ to extract reads occurring at specific scaffolds and loci. I essentially want to call "samtools view sample.bam -o sample.sam scaffold:pos-pos" from...
Asked on 08/10/2021
3 answerBowTie2 puts out summary info to the terminal but doesn't allow me to save each to a separate file. How can I go about saving the output of BowTie2 so...
Asked on 08/07/2021
1 answerI am sequencing long read genomic sequences to assemble MHC region haplotypes in a non model organism using Cas9 Sequencing Kit (SQK-CS9109) using flongle adaptors in the minION from Oxford...
Asked on 08/03/2021
1 answerI'm assigned a task to fetch sequence records from "pubmed" database. I know this database is for publications and citations, but how can I retrieve those records from it? is...
Asked on 08/03/2021
0 answerI'm working on gut microbiota data. I want to perform a biplot showing my 2 enterotypes and the major OTU explaining the variance between my two enterotypes. Something like :...
Asked on 08/02/2021 by Gaël.T
0 answeri'm using this commandgmx mdrun -deffnm nvt0 -nb gpubut gotNonbonded interactions on the GPU were requested with -nb gpu, but the GROMACSbinary has been built without GPU support....
Asked on 07/31/2021
1 answerI was running CIBERSORT but caught this error right after it started permutation:org.rosuda.REngine.Rserve.RserveException: eval failed, request status: error code: 12788...
Asked on 07/28/2021 by Dr_Hope
1 answerI'm trying to align the Acinetobacter baumanii genome to a genome. I've already done the alignment, and I want to use bedtools to see which genes are being expressed exactly....
Asked on 07/27/2021
1 answerHow can I find ligands of receptors (or vice versa)? For example, I want to find the receptors of IL-8 (CXCL8)....
Asked on 07/23/2021
3 answerI am trying to collect gene expression data for the point of fitting gene regulatory networks. My background is primarily in computer science and so I am finding the biological...
Asked on 07/23/2021 by WedgeAntilles
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