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I am using Rcircos to make a chromosome ideogram plot for my gene list (n = 45). However, I am getting this error: Not all labels will be plotted....
Asked on 08/21/2021
2 answerI'm working on a Seurat object and want to name the clusters according to 2 values alone (yes/no). So I want to add a new column to metadata and annotate...
Asked on 08/21/2021 by Najeha Mohamed
1 answerI have 3 histone marks,I have used Macs2 for peak calling and diffBind to analyze the peaks. I was wondering if you know any way to calculate the peak numbers...
Asked on 08/21/2021 by Mariam
1 answerI would like to subset a GFF file (gene and nested features) from a gene list. The GFF file looks like this##gff-version 3Scaffold_1 JGI...
Asked on 08/21/2021 by Felipe Almeida
2 answerI have been creating phylogenetic trees using RAxML (using Boostrap + ML) and I end up with a bestTree file, outputted in newick format. When I open up the tree...
Asked on 08/21/2021 by Ace8910
1 answerFirst of all I apologize without the question is very basic, I am taking my first steps in bioinformatics.Data informationWe are evaluating the correlation (using the Pearson, Kendall or Spearman...
Asked on 08/19/2021
1 answerMaxQuant is a software package for mass spectroscopy and proteomics. There is a windows version and a linux version. To run on linux you have to use a program that...
Asked on 08/19/2021
2 answerI'm looking at a genome sequence for 2019-nCoV on NCBI. The FASTA sequence looks like this:>MN988713.1 Wuhan seafood market pneumonia virus isolate 2019-nCoV/USA-IL1/2020, complete genomeATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTG... ...TTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAACoronavirus...
Asked on 08/19/2021 by jameshfisher
4 answerSay a database were to store human omics datasets. The human subjects are known and the sample size is rather small in size initially (n=500). The database contains genomics, transcriptomics,...
Asked on 08/19/2021 by clove444
2 answerI want to extract metadata from experiment SRX1596422. I have sratoolkit and Entrex direct but not sure what line of code to use. Here's the link for the experiment: ...
Asked on 08/19/2021 by Ophelia Vallee
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