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I have a fasta file assembly and combining it with the raw reads we produced a .bam file which I converted to .sam . The .sam information lines look like...
Asked on 11/05/2020 by fullmooninu
1 answerI have recently ran in R four geneset enrichment analysis in the same database (TCGA:breast cancer) comparing two intrinsic subtypes. The methods I used were:MIGSA, that imports mGSZ package and...
Asked on 11/05/2020 by Darío Rocha
1 answerI'm looking to run meta analysis. First step is data curation. How exactly data curation for metanalysis is done? I did a few searches which gave me some lead how...
Asked on 11/04/2020
0 answerI am analyzing viral metagenomics data (Illumina Miseq) for the first time. I have used Ray for de novo viral genome assembly before but I haven't done...
Asked on 11/01/2020 by L R Joshi
1 answerI am trying to use AutoDock Vina to do docking however I am getting this error. I would really appreciate any help as I have not been able to resolve...
Asked on 10/18/2020 by ibio_rep1
0 answerI am working with short-read whole-genome sequences from the NCBI's SRA. I have aligned and sorted all of my short-read sequences and am attempting to index each sequence into .bai...
Asked on 10/17/2020
1 answerI'm trying to plot a simple distance tree of my blastn output with nj (like the tree view on NCBI). From what I understood, what I think I should do...
Asked on 10/11/2020
1 answerI want to find the effect-increasing allele for a given set of SNPs. For quantitive traits, I understand the effect sign is changed when the A1 and A2 are...
Asked on 10/09/2020 by Dale Handley
0 answerI am running into an error when I tried to run the following lines of code, the error at line 3:1 from rpy2.robjects.packages import importr2 base = importr('base')3 base.source("http://www.bioconductor.org/biocLite.R")4...
Asked on 09/27/2020 by aBiologist
1 answerI'm updating a galaxy tool wrapper for Entrez's eutils suite and I'm trying to create a form with valid link selections (among other things) based on the "from" & "to"...
Asked on 09/10/2020 by hepcat72
1 answerGet help from others!
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