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I have assembled a virus genome using Ray resulting in approximately 5000 contigs. Now I want to build a scaffold of those contigs to get the full...
Asked on 12/22/2020
3 answerI am reading a book about RNAseq analysis and it says"To calculate the probability that a read will map to a specific gene, we can assume an average gene size...
Asked on 12/20/2020 by Bio314
1 answerI have been calculating the binding Affinity between a Ligand and a Protein using both AutoDock Vina and AutoDock tools but the binding affinity estimates obtained from the 2 molecular...
Asked on 12/20/2020
0 answerI ran the orthomcl program with genomes of the whole streptomyces genus(from ncbi) as input, but I only got 22 orthologous groups(streptomyces's genome size vary from 2M to 15M, which...
Asked on 12/18/2020 by TANGLi83
1 answerI am trying to run the ADMIXTURE software for the first time to analyse the structure of an in-house dataset of samples comparing to 1000 genomes project ancestral populations. I...
Asked on 12/17/2020 by Iriel
1 answerI have fitted a cox model on a pooled dataset of multiple studies, say study A, B and C. As these studies have different baseline hazard functions, I stratified for...
Asked on 12/17/2020 by Nienke
1 answerI am independently working on data retrieved SRA database, paired-end data as separate inputs. After running FastQC using Galaxy, majority of the modules have failed. I tried Trimmomatic with default...
Asked on 12/16/2020
0 answerI am posting this message because I need clarity about the analysis I want to perform.In my analysis, I have a homologous gene in 13 species, and I would...
Asked on 12/14/2020
1 answerI got a FASTA file from NCBI RefSeq.These proteins are annotated with IDs like this : protein_id=XP_019970915.1.What type of ID is this? I would like to have them...
Asked on 12/14/2020 by Firingam
1 answerSome backgroundSimilar to the OP of https://www.biostars.org/p/377840/, I would like to programmatically BLAST a sequence to a local database of all WGS assemblies.Since this isn't feasible...
Asked on 12/12/2020 by Oren Milman
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