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Copy number variation (CNV) is a phenomenon in which sections of the genome are repeated and the number of repeats in the genome varies between individuals.Copy number variation is a...
Asked on 01/30/2021
0 answerI manually selected all 4000 sequences on the 20 pages of the SARS-CoV-2 sequences on genbank here. When I click on Build phylogenetic tree, it only has...
Asked on 01/29/2021 by shadi
1 answerI am annotating a genome using the batch tool blastwise.pl in gene wise v2.4.1. I installed it successfully as the following test report, and I can call all sub-programs in...
Asked on 01/28/2021 by YP CHEN
0 answerI'm parsing clinvitae using the python hgvs module. For each variant, I want to generate the variant DNA sequence in a 500 bp radius around the variant position. I don't...
Asked on 01/28/2021 by wild type
0 answerWhat origins for virus HIV1? This is the alignment of a small part of the POL protein of the HIV1 virus GenBank KU749412.1, with the POL protein of the Visna...
Asked on 01/27/2021
1 answerMy tutorial linklibrary(GenomicAlignments)atacReads <- readGAlignmentPairs("MACS2_peak_call/ALL_ATAC_data/HSC1.bam", param = ScanBamParam(mapqFilter = 1, flag = scanBamFlag(isPaired =...
Asked on 01/26/2021
1 answerI used the below code to do CAP analysis to link microbial data with elements, but not sure how to do statistical analysis to show which element variation is responsible...
Asked on 01/25/2021
1 answerI was working with a dataset containing genes. The central plot of the model after using "shrunken centroid" is like the following picture: I...
Asked on 01/25/2021 by homa taha
0 answerI want to create custom tracks from these files I can add the line : track type=narrowPeak name=“narrowPeak” manually by opening...
Asked on 01/25/2021 by Libby Kosolapov
1 answerSorry if this is a stupid question I am new to analysing targeted hybrid capture data. I am analysing my HTS data from a targeted hybrid capture enrichment method and...
Asked on 01/24/2021 by trouselife
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