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I am working on a project and used the following command:vsearch --derep_fulllength filtered_merged.fa -sizeout -relabel Uniq -output dereplicated_filtered_merged.faand got the following output:87373926 nt in 203453 seqs, min 310,...
Asked on 03/01/2021 by DumbledoreTheGrey
1 answerThis question has also been asked on Biostars I am trying to run htseq-count for carrying out rna-seq analysis for solanum tuberosum and i used the following...
Asked on 02/28/2021 by Lavanya C
0 answerI got my sequencing results (bisulphite treated and non treated sequences of same species Allium cepa) and now I have to do analysis in Cymate online tool. I prepared all...
Asked on 02/27/2021 by alimm94
0 answerHi there I am still a novice at this. I'm trying to run this perl script called FullSSR https://sourceforge.net/projects/fullssr, by following the instructions in their 'README.TXT' ...
Asked on 02/25/2021 by ShawnC
1 answerThe authors of an article are comparing different cell type and the organ type and they show the ontology enrichment of the RNA-seq:Cell-type-specific and organ-specific marker genes...
Asked on 02/25/2021
1 answerThere is a place in my pipeline where I call PDB's API with a ribosomal id to get all the subchains of that molecule programmatically I'd like to separate subchains...
Asked on 02/21/2021 by rtviii
0 answeri am a bit confused how to read the current E value annotation on NCBI BLAST results. I looked into the matter but could not find an factual answer ....
Asked on 02/21/2021 by user12256545
0 answerI am using VEP from Ensembl to annotate my VCF files with the extra plugins of GeneSplicer, MaxEntScan and ...
Asked on 02/20/2021 by Law
0 answerI wish to convert a kraken2 or metaphlan2 report into the R package to analyze using Phyloseq. I have performed obtained an importation and Phyloseq analysis, but the result was...
Asked on 02/20/2021
0 answerI am trying to assemble the run SRR12196449 with SPAdes. The description of their project is:This project expected to standardize a method for amplification andsequencing of FIV genome in...
Asked on 02/19/2021
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