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calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMetrics

I am trying to follow a tutorial from Sanger institute (from May 2019) on analysis of single cell RNA Seq data. They use calculateQCMetric function to calculate the quality metrics,...

2

Bioinformatics Asked on 2 years ago

Changing active.ident in Seurat

Im trying to change the active.ident to another column in metadata but this error keeps popping up! I recently upgraded to R version 4.0.2 from 3.6.1 The older version was...

1

Bioinformatics Asked on 2 years ago

Why I am not getting approximate equiprobable states in the following circuit on IBM Q simulator?

I have the following circuit which consists of symmetric modules. I compiled the circuit in IBM Quantum experience backend - ibmq_qasm_simulator, 8192 shots. The result is not equiprobable. Why? Since...

1

Quantum Computing Asked on 2 years ago

How to calculate the "secret" field of an activation operation?

For particular reasons (let's say I am creating a Tezos faucet) I want to send an activation operation to Tezos blockchain. This kind of operation (activate_account) requires three fields: kind,...

2

Tezos Asked on 2 years ago

How to display the range of coefficients in docplex log?

A typical gurobi log can have a section where it shows the range of coefficients. Something like:Coefficient statistics: Matrix range [1e+00, 6e+01] Objective...

1

Operations Research Asked by EhsanK on 2 years ago

Scenario based approach to value-at-risk optimization using mixed-integer programming

For a discrete set of scenarios, minimising value at risk can be formulated as a mixed integer linear programming problem. If each scenario has equal probability then this can be...

1

Operations Research Asked on 2 years ago

How well can we model chemical synthesis?

The Materials Genome Initiative held a 2017 workshop, that led to this published report: de Pablo et al., "New frontiers for the materials initiative," npj Computational...

3

Matter Modeling Asked by Anyon on 2 years ago

Is it required to sample the full reaction coordinate in umbrella sampling?

Below is the free energy profile obtained after a histogram analysis of an umbrella sampling simulation. Generally, one is interested in the free energy difference (highest energy minus lowest energy)....

1

Matter Modeling Asked by BND on 2 years ago

Problem with even indexes in Java program

The method takes 2 parameters (String,char) and returns the string with the char replaced by '+' if index is even and '#' if index is odd. The String I use...

6

Stack Overflow Asked by ioThio on 2 years ago

calling String method from different class to main class

I have 3 classes; Date class, profile class and main class. I want to call a getDateString method from Date class and bypass profile class and read a scanner input...

1

Stack Overflow Asked by Chan Myae Tun on 2 years ago

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