Find answers to your questions about Bioinformatics or help others by answering their Bioinformatics questions.
I am using godon to find genes under positive selection with the branch-site test. However, after running for a little while I get the error "panic: division of zero by...
Asked on 04/02/2021 by Samuel Zimmerman
1 answerI have created a heat map using WGCNA using R. But the heat map command is not showing the plot and there is no error. I have a large number...
Asked on 04/02/2021
2 answerI am getting this error with MaxQuant 1.6.14 running with mono (5.14.0.177=he1b5a44_1001).System.IO.FileNotFoundException: Could not find file "/home/ubuntu/run-dir/combined/combinedRunInfo"And I not sure why I am getting this error. The process has read...
Asked on 04/01/2021
1 answerSorry if this question is obvious - I'm not familiar with proteomics so I'm not sure of the standard units. In this paper, it talks about using...
Asked on 03/31/2021
1 answerI have around 10,000 FASTA files of Influenza A virus. These files contains sequences of each of the 8 segments of the viral genome and I want to separate these...
Asked on 03/31/2021
2 answerUsing Crowell 52. When I do a glob to get matching files, Cromwell places a copy of each matching file in the glob-* directory. As these are multi-gigabyte Bam...
Asked on 03/30/2021
0 answerI’m using STAR to align fastq files from SMART-seq2. I have raw data folder containing sub-folders with samples names the sub-folders each contain fastq file. How can I make a...
Asked on 03/30/2021 by mobasher barsi
0 answerI have a fasta file (gene.fasta)with sequences with names patterns: >Hsc_gene_9627.t1ATGGCACGCATTTTCCTCATTCTTTTATTGCTGCACAACATCTGCTGTGCAGCCGCTTCATTGCTCATTTTGAATGCCGTTACATTGGAGAAGGATGCTAATGATTATGCCGTTGGCGATand I have the Ids in text file (seq.txt) which are not the exact as in the fasta...
Asked on 03/27/2021 by Samer Habash
1 answerI am trying to extract all chimeric and multi-map reads from either SAM/BAM file. Is there any simple command to do that? Can I use htslib for parsing sam/bam files...
Asked on 03/26/2021 by SBDK8219
1 answerI don't have any theoretical background in biology, so forgive me if my question is a bit.. well..dumb. I'm trying to use a Monte Carlo approach to find the discriminating...
Asked on 03/25/2021 by space_gladiator
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