Find answers to your questions about Bioinformatics or help others by answering their Bioinformatics questions.
I'm trying to learn graphical analysis in a biological setting. The online course suggested using the Go Programming language, so I'm new to it and help to understand why the...
Asked on 04/07/2021
1 answerI'm trying to use the code specified in this link to create a .bam file without the need for a .sam file. Here is the code I'm using:bwa...
Asked on 04/05/2021
2 answerI am working with a RNA-seq data set in maize that has a relatively complex design. There are two levels of treatment A (nitrogen fertilizer level in the field, high...
Asked on 04/04/2021
1 answerI'm trying to Blast for exact matches to the sequence: 'ATTGNNNNGCAAACCA' in the human transcriptome using NCBI Blast on its 'refseq_rna' database. However, when I do a basic query I...
Asked on 04/04/2021 by Mike Flynn
1 answerCould you please help me to understand what is the difference between Permutational multivariate analysis of variance (PERMANOVA,adonis) and Variance partitioning(permutest). I understood that permutest is used to...
Asked on 04/04/2021
1 answerI wondered how would I be able to obtain variant based on chrom and location range. Optimally, this function would be like:import vcfvcf_reader = vcf.Reader(filename=some_file_name)vcf_read = vcf.variants_between(CHROM, START, END)Does...
Asked on 04/04/2021
1 answerI am a computer scientist just starting out in bioinformatics topics, and would appreciate any guidance that can be given here: I have an mRNA sequence- an...
Asked on 04/04/2021
2 answerI've got some doubts on the hisat2 --rna-strandness option and its output for downstream analysis. Please see below. I understand that the --rna-strandness option produces an XS tag to indicate...
Asked on 04/04/2021 by guan
1 answerI am stuck on how to do correlation for two independent data sets with common row and column names.A and B are datasets that contain as many rows as...
Asked on 04/03/2021
1 answerIs it currently common in metabolomics to combine two quantification methods, namely NMR (nuclear magnetic resonance) and MS (mass spectrometry, either liquid or gas)? If so, what would be profits...
Asked on 04/02/2021 by Garrus990
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