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I have 3 VCF files, I want to make CIRCOS plot just like the following: https://www.nature.com/articles/s41598-020-70527-8/figures/4 I try to follow the tutorial but could...
Asked on 05/01/2021
0 answerHi there :) Thanks for the tool! I recently updated to the new salmon (from 0.8... its been a couple years) and I noticed that my mapping percentages change dramatically...
Asked on 04/29/2021 by Courtney Stairs
1 answerWhen we use local data using TwoSampleMR, how can we assign LD proxies where the outcome data is not available? https://mrcieu.github.io/TwoSampleMR/articles/outcome.html outcome_dat <- read_outcome_data( ...
Asked on 04/28/2021
0 answerI have a text file that contains a list of IDs (314 sequences):AVP78031.1AVP78042.1ATO98108.1ATO98120.1ATO98132.1...My goal is to make a script (maybe using Python or Perl) to check in the list...
Asked on 04/27/2021 by Mauri1313
1 answerThe problemIf I have a sample sheet that contains both single-indexed and dual-indexed samples, I can split it up into two sample sheets and then run bcl2fastq on each one....
Asked on 04/27/2021 by AmadeusDrZaius
1 answerI have large filtered, normalized dataset of scRNA-seq data of C.Elegans species. Rows are genes (10 000), columns are cells (66 000). Let's say that I got 40 different groups...
Asked on 04/26/2021 by Nikita Vlasenko
2 answerIs there a paper or web page describing the procedure for creating the nr database used by NCBI's BLAST implementation? I presume it's some type of clustering, but I'm curious...
Asked on 04/25/2021 by juniper-
2 answerI have merged together 2 different .bam files in order to simulate sample contamination. So the reads can come from one of two samples, as shown by the read group...
Asked on 04/25/2021 by user438383
0 answerI've been using MEGAHIT to assemble metagenomes, with particular focus on specific genomic areas. Sometimes all I get is gene fragments or pathway fragments (eg. if I know that genes...
Asked on 04/25/2021
1 answerI have a list of PDB IDs with realtive chains that are to be extracted, and the run on dssp.For the single chain extraction I tried several methods, such...
Asked on 04/24/2021 by saiden
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