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I successfully installed cellranger and performed a test run. Even, I installed bcl2fastq. Everything looked perfect. Thus, I ran cellranger count. I ran into an error during the cellranger count...
Asked on 05/09/2021 by raiora
0 answerLike the propagation delay and threshold value parameters in electronic circuits, does SBOL format support any such parameters/glyph to represent the propagation delay (time to trigger the output protein once...
Asked on 05/09/2021 by Hasan Baig
1 answerI'm working with a set of homologous genes (let's call it gene A) from several bacterial species. I know (from previously published research) that in gene B (a close paralogue...
Asked on 05/07/2021
1 answerHi I am trying to learnt python3 and Biopython, I am trying to check imported fasta file before processing so far using:sequences = SeqIO.parse("fake_fasta_file", "fasta")if not any(sequa): ...
Asked on 05/07/2021
1 answerCan some explain why when I run a REST API query on UniProt for one ID ('Q9UJL9'), the results for three IDs are returned? The query I'm using is: ...
Asked on 05/07/2021 by Slowat_Kela
1 answerI am new to Python. I am trying to parse a fasta file containing 10,000 sequences to look for motifs (microsatellites in particular). I tried using Seq Utils to parse...
Asked on 05/06/2021
3 answerI am trying to follow a tutorial from Sanger institute (from May 2019) on analysis of single cell RNA Seq data. They use calculateQCMetric function to calculate the quality metrics,...
Asked on 05/04/2021 by Yach
2 answerI have gene expression datasets A and B that contain as many rows as genes and as many columns as samples. The rows in A and B represent a common...
Asked on 05/04/2021
0 answerI tried running this command python blastp.py CmydPro tlr TLR.txt to extract the query sequence for the target species I'm looking at. However, whenever I try running it always comes...
Asked on 05/03/2021 by dominic chang
1 answerI am trying to implement the algorithm implemented in this paper on Python. Basically it is a multi labeling algorithm to make out of sample prediction at...
Asked on 05/01/2021
0 answerGet help from others!
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