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In a genomic study of patients infected with SARS-CoV-2, the authors detected cross-replicating associations with rs11385942 at locus 3p21.31 , the association signal spanned the genes SLC6A20, LZTFL1, CCR9,...
Asked on 05/23/2021
1 answerI am currently working on gene clustering based on co-expression pattern in mouse brain. The problem is I do not have some solid way to test my result. Are there...
Asked on 05/23/2021 by jasperhyp
1 answerI'm trying to evaluate a method that I'm not familiar with. They used SNPRelate. I'm wondering if this is the best / only choice... what other tools would you recommend?...
Asked on 05/23/2021 by Dan Bolser
0 answerI have count data from a RNAseq experiment (2 samples are from normal cells and 3 samples are cells with a disease), and the data is already standardized by trimmed...
Asked on 05/20/2021
1 answerI am using the GSVA package in R to do single sample gene set enrichment analysis (ssgsea) using method = ssgsea. This works, but I do not understand the output....
Asked on 05/19/2021 by Sylvia Rodriguez
0 answerI am using the package STAECY v1.2.5 in beast v2.6.3. But it failed in testing the test1.xml in STACEY example package. I am attaching the beast running log below....
Asked on 05/19/2021
0 answerThe simple question is: how to store relative abundance data in a database? Which database to choose? I am talking here about metagenomics data, relative abundance of species or some...
Asked on 05/19/2021 by Art
0 answerI am doing an RNA seq analysis with mouse samples. I had my reads in several lanes, so I concatenated those fastq reads. Then I've mapped my reads with Hisat2...
Asked on 05/19/2021 by user9393
1 answerMy third year comp sci friend got me this far, I hope you guys can help me with the last inch! For the record, I have practically no coding experience....
Asked on 05/18/2021 by DansterBoy
0 answerI am trying to reproduce some results of a scRNASeq experiment. However I am new to the server-side aspect of such analyses and am very confused at the moment. The...
Asked on 05/18/2021 by h3ab74
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