Find answers to your questions about Bioinformatics or help others by answering their Bioinformatics questions.
I did molecular dynamic simulations with DESMOND. Now, I want to obtain the interaction free energy using MM/PB(GB)SA. The free tools I found to perform such calculations are ...
Asked on 06/02/2021 by user9085
0 answerI was able to compute the significance of the overlap between 2 gene sets using the cdf function of scipy hypergeometric distribution. I wish to be able...
Asked on 05/31/2021
1 answerI have been using EdgeR from the Bioconductor package to perform differential expression analysis on bulk RNASeq data sets. This analysis gives me an output dataframe that...
Asked on 05/30/2021 by Nova
2 answerAs a small introductory project, I want to compare genome sequences of different strains of influenza virus. What are the publicly available databases of influenza virus gene/genome sequences?...
Asked on 05/30/2021 by AlwaysTrying44
3 answerProblem StatementThe GFF3 format is a commonly-used one in bioinformatics for representing sequenceannotation. You can find the specification here: http://www.sequenceontology.org/gff3.shtml The genome and annotation for...
Asked on 05/29/2021 by Kendal B.
1 answerI have a large data-frame (excel file) of SNPs with genotyping data. I need to filter the data to get SNP information of a specific gene alone. The list is...
Asked on 05/29/2021
1 answerI am working on a project using a fasta file. I am writing my command in nano within command-line and executing using python, also within my command-line. I would like...
Asked on 05/29/2021 by Edwardo
2 answerRecently, I have downloaded a publicly available dataset, which are 350 tumor samples. I see the following information from the published paper. ...
Asked on 05/28/2021
2 answerI have a bam file from paired-end sequencing, in which each R1 has the RX tag assigned (via UMItools group) denoting a Unique Molecular Identifier (UMI). I want to call...
Asked on 05/27/2021 by SPPearce
1 answerI did a Pearson co-expression analysis for generating networks for my tissue-specific (chondrocytes) RNA-seq data. I used R package poweRlaw to check for the power-law distribution. We got the following...
Asked on 05/25/2021
1 answerGet help from others!
Recent Answers
Recent Questions
© 2024 TransWikia.com. All rights reserved. Sites we Love: PCI Database, UKBizDB, Menu Kuliner, Sharing RPP