My references do not align for bibliography that is manually input

Your references contain quite a few syntax errors, e.g., unescaped & characters. Moreover, the URL strings aren't encased in url directives. You must have been getting a ton of error messages. What did you do with them? Your thebibliography environments also contains several newpage directives: Why?

Anyway, once I fixed these issues and changed begin{thebibliography}{9} to begin{thebibliography}{99} (since the environment contains more than 9 but fewer than 100 entries), the bibliography compiles without further issues. There may be factual errors and formatting mistakes left, but no further syntax errors (I think...).

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begin{thebibliography}{99}

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