Stack Overflow Asked by Thisara Watawana on February 6, 2021
I’m new to OpenShift and currently exploring its functionalities using the OpenShift online. I created a simple R Shiny application and created the following Dockerfile to build a custom image in OpenShift.
# Base image https://hub.docker.com/u/rocker/
FROM rocker/shiny:latest
# expose port
EXPOSE 3838
# system libraries of general use
## install debian packages
RUN apt-get update -qq && apt-get -y --no-install-recommends install
libxml2-dev
libcairo2-dev
libsqlite3-dev
libmariadbd-dev
libpq-dev
libssh2-1-dev
unixodbc-dev
libcurl4-openssl-dev
libssl-dev
## update system libraries
RUN apt-get update &&
apt-get upgrade -y &&
apt-get clean
# copy necessary files
## app folder
RUN mkdir -p /srv/shiny-server/soker
COPY docker.Rproj /srv/shiny-server/soker
COPY server.R /srv/shiny-server/soker
COPY ui.R /srv/shiny-server/soker
COPY renv.lock /srv/shiny-server/soker
COPY server.R /srv/shiny-server/soker
COPY renv /srv/shiny-server/soker/renv
# install renv & restore packages
RUN Rscript -e 'install.packages("renv")'
RUN Rscript -e 'renv::consent(provided = TRUE)'
RUN Rscript -e 'renv::restore()'
RUN chown -R shiny /srv/shiny-server/
RUN chown -R shiny /var/lib/shiny-server/
# Run as a non-root user
USER 997
# run app on container start
CMD ["R", "-e", "shiny::runApp( '/srv/shiny-server/soker',host = '0.0.0.0', port = 3838)"]
This DockerFile is in the source folder with the following server.R and ui.R files.
server.R
server <- function(input, output) {
output$distPlot <- renderPlot({
x <- faithful$waiting
bins <- seq(min(x), max(x), length.out = input$bins + 1)
hist(x, breaks = bins, col = "#75AADB", border = "white",
xlab = "Waiting time to next eruption (in mins)",
main = "Histogram of waiting times")
})
}
ui.R
library(shiny)
ui <- fluidPage(
titlePanel("Hello Shiny!"),
sidebarLayout(
sidebarPanel(
sliderInput(inputId = "bins",
label = "Number of bins:",
min = 1,
max = 50,
value = 30)
),
mainPanel(
plotOutput(outputId = "distPlot")
)
)
)
And using the OpenShift CLI, I ran a dry run using the below command.
oc new-app <repository>
--source-secret <secret> --name newapp --strategy=docker --dry-run -o json
Even though I’ve exposed the port 3838 in my Dockerfile, the output doesn’t show the port 3838.
"spec": {
"containers": [
{
"name": "newapp",
"image": "newapp:latest",
"ports": [
{
"containerPort": 8080,
"protocol": "TCP"
},
{
"containerPort": 8443,
"protocol": "TCP"
}
],
"resources": {}
}
]
}
}
},
Am I missing something here? How can I add port 3838 to be the default port for the container? I’ve run this on local environment using Docker and I could access the shiny app by typing localhost:3838.
In order to have OpenShift recognize an exposed port, I believe that you will need to express this in a LABEL
on the Dockerfile
LABEL io.openshift.expose-services="8080:http"
Source: https://github.com/sclorg/s2i-python-container/blob/master/3.9/Dockerfile.fedora#L33
Answered by Will Gordon on February 6, 2021
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