Effects of Non-Linear Atomic Laser

As "lasers" formed from the stimulated emission of Bose-Einsten condensates do not follow Maxwell’s linear equation’s which are normally used when calculating current lasers, how would this Atomic Laser behave differently when interacting with conventional matter than with photonic lasers?
To set an example, as Atom Lasers have small wavelength’s without having the destructive energies that a comparable photon laser would have at those wavelength’s, like a Gamma ray laser, would it be feasible to consider that such a laser could make the system it is interacting with be in resonance with it? Thank you