Geographic Information Systems Asked on March 24, 2021
I wrote a code based from rasterio and numpy that gets the nanmean of every pixel from multiple of raster images. I first read it using rasterio, then I convert the array to float32 so that I can set the NaN (-32768) values to np.nan. I then add each image to a list.
When the list is filled. I then compute it using np.nanmean from numpy. Real enough that NaN values were ignored in computing the output image. However, I do not understand the values from the resulting image. The input raster images have a value from 0 to 5. My output has a value 0 – 20000.
Note: The input images are really Float32 in QGIS. I dont know why it was converted to Int16 in rasterio.
import rasterio
from glob import glob
import numpy as np
path = '/my/directory/*.nc'
output = 'output/AOT_L2_Mean_MAM.tif'
datasets = glob(path)
rasters = []
for data in datasets:
ds = rasterio.open(f'netcdf:{data}:AOT_L2_Mean')
band = ds.read(1)
#print(band.dtype)
band = band.astype('float32')
band[band==-32768] = np.nan
rasters.append(band)
out = np.nanmean(rasters, axis=0)
with rasterio.open(
output,
'w',
driver='GTiff',
height=out.shape[0],
width=out.shape[1],
count=1,
dtype=out.dtype,
crs='EPSG:4326', # +proj=latlong
) as dst:
dst.write(out, 1)
Have you tried:
band = ds.read(1, masked=True)
Answered by snowman2 on March 24, 2021
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