Reference request: Textbook similar in structure to "Computational Materials Science: An Introduction" by June Lee for Computational Biology

In the Computational Materials Science: An Introduction by June Lee, he discusses molecular dynamics and density functional theory with examples from LAMMPS and QuantumEspresso, and explains LAMMPS and QuantumEspresso in detail.

I was wondering if there is a similar text in Computational Biology for molecular dynamics but in GROMACS/NAMD, I can use tutorials but I would like to find a textbook with more examples and explanations.