Chemistry Asked by Crops on November 23, 2021
I am trying to understand the data analysis of fluorescence decay counts measured by TCSPC technique, particularly with reconvolution with measured IRF.
I am able to get the fitted counts (given by the software according to the model only in the case of tail fitting and not in the case of reconvolution.
The basic model is a multi-exponential decay with y-offset(background-offset).
$$
I(t) = A + sum_{i}^{N}B_{i}textrm{e}^{frac{-t}{tau_{i}}}
$$
Here $B_{i}$ and $tau_{i}$ are the pre-exponential and lifetime due to the $i$th component respectively and $A$ is the y-offset.
The fitted parameters for a 2 exponential model ($I(t) = A + B_{1}textrm{e}^{frac{-t}{tau_{1}}} + B_{2}textrm{e}^{frac{-t}{tau_{2}}}$) are.
A = 11.63431
T1 (ns) = 0.221457836
T2 (ns) = 2.69572
B1 = 6618.36
B2 = 644.1506
Time per channel (ns) = 0.026128421
Data range = 402:1289
Peak count = 10000
Total count = 190155
Here I am able to get the fitted counts in the following example by using these parameters. For example in case of bin no. 405.
| | Bin | Time (ns) | DecayCount | FittedCount |
|----|-----|-----------|------------|-------------|
| 0 | 401 | 10.47750 | 9464 | - |
| 1 | 402 | 10.50363 | 8462 | 6531.378 |
| 2 | 403 | 10.52975 | 7298 | 5870.6414 |
| 3 | 404 | 10.55588 | 5758 | 5282.8124 |
| 4 | 405 | 10.58201 | 4800 | 4759.7832 |
| 5 | 406 | 10.60814 | 4069 | 4294.3481 |
| 6 | 407 | 10.63427 | 3396 | 3880.1036 |
| 7 | 408 | 10.66040 | 2908 | 3511.3585 |
| 8 | 409 | 10.68652 | 2649 | 3183.0549 |
| 9 | 410 | 10.71265 | 2315 | 2890.698 |
| 10 | 411 | 10.73878 | 2171 | 2630.2929 |
I am able to plug in the fitted values of the model parameters in the formula to get the fitted count values for any time $t$.
t = 10.58201035 - 10.47749666 = 0.104513682
FittedCount = 11.63431 +
(6618.36 * exp(-0.104513682/0.221457836)) +
(644.1506 * exp(-0.104513682/2.69572)) = 4759.783
Here the model is.
$$
I(t) = L(t)otimes sum_{i}^{N}B_{i}textrm{e}^{frac{-t}{tau_{i}}}
$$
$$
F(t) = A + B.I(t+Delta)
$$
Here $B_{i}$ and $tau_{i}$ are the pre-exponential and lifetime due to the $i$th component respectively, $L(t)$ the instrument response function (IRF), $B$ is the amplitude scaling factor, $Delta$ is the shift parameter and $A$ is the y-offset.
A = 11.41109
T1 (ns) = 0.191460122
T2 (ns) = 2.626401242
B1 = 0.2411146
B2 = 0.007343028
Shift (ns) = -0.158856098
Time per channel (ns) = 0.026128421
Data range = 398:1289
Peak count (Decay) = 10000
Total count (Decay) = 190155
Peak count (IRF) = 10000
Total count (IRF) = 101269
How to get the fitted counts in the case of reconvolution fit ?
| - | Bin | Time (ns) | IRFCount | DecayCount | FittedCount |
|----|-----|-----------|----------|------------|-------------|
| 0 | 397 | 10.37298 | 9743 | 5665 | - |
| 1 | 398 | 10.39911 | 10000 | 7982 | 9757.034 |
| 2 | 399 | 10.42524 | 9776 | 9420 | 9106.409 |
| 3 | 400 | 10.45137 | 8918 | 10000 | 8363.679 |
| 4 | 401 | 10.47750 | 7445 | 9464 | 7626.371 |
| 5 | 402 | 10.50363 | 5922 | 8462 | 6899.12 |
| 6 | 403 | 10.52975 | 4538 | 7298 | 6221.999 |
| 7 | 404 | 10.55588 | 3327 | 5758 | 5582.207 |
| 8 | 405 | 10.58201 | 2450 | 4800 | 5004.482 |
| 9 | 406 | 10.60814 | 1605 | 4069 | 4481.801 |
| 10 | 407 | 10.63427 | 1191 | 3396 | 4012.029 |
Specifically, in the calculation, How to
I have tried multiplying by the total IRF count value to get the $B_{i}$s corresponding to a tail fit, but still not getting the fitted counts as in the output.
Here are the comments regarding scaling of $B_{i}$s by the scaling factor $B$ in few fitting software program documentations.
http://www.nanoer.net/d/img/1-FASTissue6.pdf
If the fit was performed in the Reconvolution mode, $B_{i}$ values are
scaled by the integrated IRF, i.e. if the same decay would be analysed
with a 10 times bigger IRF, the numerical values of the $B_{i}$ values would
be reduced by a factor of 10. If one determines the total number of
counts of the IRF, and then multiplies the $B_{i}$ value with this number,
this will result in a value that will be similar to the $B_{i}$ value for a
tail fit, extrapolated to the channel of the peak of the IRF.
The magnitude of the $B_{i}$ values returned in the fit are dependent
on whether or not reconvolution is used in fitting the data.
Without reconvolution the values are in counts and can easily
be linked to the peak number of counts (ie for a single
exponential its magnitude should be ~ the count value in the
start channel). The value after reconvolution is not in
counts, but still reflects the amount of a particular
emitting species.
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