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nanopore QC measures on fastq file

Bioinformatics Asked by Arun Venugopalan on August 22, 2021

I am working with virus nanopore sequencing data. I have to remove host genome from the reads. I want to run the QC on the fastq file after host genome subtraction. I have used nanoplot. It is slow. I dont have summary.txt. Is there any nanopore read specific qc package which can directly take nanopore fastq files.

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