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Is there an R package that computes homoplasy excess ratios (HER)?

Bioinformatics Asked on February 3, 2021

I want to calculate the homoplasy excess ratio for a phylogenetic tree, for example homoplasy resulting from recombination.

I am wondering if there are any R packages out there that will do this?

One Answer

Maynard's Smith's homoplasy is what you want and it is available in the recombination detection package (RDP) described here. Its really a Windows package rather than R.

Answered by M__ on February 3, 2021

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